PatternLabforProteomicsisanintegratedcomputationalenvironmentforanalyzingshotgunproteomicdata.PatternLabcontainsmodulesforformattingsequencedatabases,performingpeptidespectrummatching,statisticallyfilteringandorganizingshotgunproteomicdata,extractingquantitativeinformationfromlabel-freeandchemicallylabeleddata,performingstatisticsfordifferentialproteomics,displayingresultsinavarietyofgraphicalformats,performingsimilarity-drivenstudieswithdenovosequencingdata,andanalyzingtime-courseexperiments.Here,wepresentPatternLabforProteomicsV,whichcloselyknitstogetherallthesemodulesinaself-containedenvironment,coveringtheprincipalaspectsofproteomicdataanalysisasfreelyavailableandeasilyinstallablesoftware.PatternLabisuser-friendly,simpleandprovidesagraphicaluserinterface.
UNICAMP-BrazilGroup-Leader:FabioCGozzo
Fiocruz/RJ-Brazil-GroupLeader:AnaGCNFerreira
ChemistryInstitute/UFRJ-Brazil-GroupLeader:GilbertoBDomont
EMBL/EBI-UK-Bioinformatician:YassetPRiverol
TheScrippsResearchInstitute-USA-GroupLeader:JohnRYatesIII
InstitutPasteur-Uruguay-GroupLeader:RosarioDurán
COPPE/UFRJ-Brazil-GroupLeader:ValmirCBarbosa
InstitutPasteur-Paris-GroupLeader:JuliaChamot-Rooke
UniversityofWashington-USA-GroupLeader:JimmyK.Eng
UniProtisacomprehensive,high-qualityandfreelyaccessibledatabaseofproteinsequenceandfunctionalinformation.
Apublicrepositoryofproteinandpeptideidentificationsfortheproteomicscommunity.
LaboratoryforComputationalandStrucuturalProteomics-Fiocruz